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1

The eukaryotic gut virome in hematopoietic stem cell transplantation: new clues in enteric graft-versus-host disease

Legoff, Jérôme, Resche-Rigon, Matthieu, Bouquet, Jerome, Robin, Marie, Naccache, Samia N, Mercier-Delarue, Séverine, Federman, Scot, Samayoa, Erik, Rousseau, Clotilde, Piron, Prescillia, Kapel, Nathal

Journal:

Nature Medicine

Année:

2017

Langue:

english

Fichier:

PDF, 543 KB

english, 2017

2

2563. Clinical Metagenomic Next-Generation Sequencing for Diagnosis of Meningitis and Encephalitis

Wilson, Michael, Sample, Hannah, Zorn, Kelsey, Naccache, Samia N, Miller, Steve, Chiu, Charles Y

Journal:

Open Forum Infectious Diseases

Année:

2018

Langue:

english

Fichier:

PDF, 100 KB

english, 2018

3

Myosin VI altered at threonine 406 stabilizes actin filaments in vivo

Samia N. Naccache, Tama Hasson

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 1.67 MB

english, 2006

4

Rosavirus: the prototype of a proposed new genus of thePicornaviridaefamily

Phan, Tung Gia, Vo, Nguyen Phung, Simmonds, Peter, Samayoa, Erik, Naccache, Samia, Chiu, Charles Y., Delwart, Eric

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 310 KB

english, 2013

5

Actionable Diagnosis of Neuroleptospirosis by Next-Generation Sequencing

Wilson, Michael R., Naccache, Samia N., Samayoa, Erik, Biagtan, Mark, Bashir, Hiba, Yu, Guixia, Salamat, Shahriar M., Somasekar, Sneha, Federman, Scot, Miller, Steve, Sokolic, Robert, Garabedian, Eliz

Journal:

New England Journal of Medicine

Année:

2014

Langue:

english

Fichier:

PDF, 906 KB

english, 2014

6

Differential Macrophage Polarization Promotes Tissue Remodeling and Repair in a Model of Ischemic Retinopathy

Marchetti, Valentina, Yanes, Oscar, Aguilar, Edith, Wang, Matthew, Friedlander, David, Moreno, Stacey, Storm, Kathleen, Zhan, Min, Naccache, Samia, Nemerow, Glen, Siuzdak, Gary, Friedlander, Martin

Journal:

Scientific Reports

Année:

2011

Langue:

english

Fichier:

PDF, 5.71 MB

english, 2011

7

A novel outbreak enterovirus D68 strain associated with acute flaccid myelitis cases in the USA (2012–14): a retrospective cohort study

Greninger, Alexander L, Naccache, Samia N, Messacar, Kevin, Clayton, Anna, Yu, Guixia, Somasekar, Sneha, Federman, Scot, Stryke, Doug, Anderson, Christopher, Yagi, Shigeo, Messenger, Sharon, Wadford,

Journal:

The Lancet Infectious Diseases

Année:

2015

Langue:

english

Fichier:

PDF, 806 KB

english, 2015

8

Clinical metagenomic identification ofBalamuthia mandrillarisencephalitis and assembly of the draft genome: the continuing case for reference genome sequencing

Greninger, Alexander L., Messacar, Kevin, Dunnebacke, Thelma, Naccache, Samia N., Federman, Scot, Bouquet, Jerome, Mirsky, David, Nomura, Yosuke, Yagi, Shigeo, Glaser, Carol, Vollmer, Michael, Press,

Journal:

Genome Medicine

Année:

2015

Langue:

english

Fichier:

PDF, 2.45 MB

english, 2015

9

Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis

Greninger, Alexander L., Naccache, Samia N., Federman, Scot, Yu, Guixia, Mbala, Placide, Bres, Vanessa, Stryke, Doug, Bouquet, Jerome, Somasekar, Sneha, Linnen, Jeffrey M., Dodd, Roger, Mulembakani, P

Journal:

Genome Medicine

Année:

2015

Langue:

english

Fichier:

PDF, 1.41 MB

english, 2015

10

Erratum to: Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing

Greninger, Alexander L., Messacar, Kevin, Dunnebacke, Thelma, Naccache, Samia N., Federman, Scot, Bouquet, Jerome, Mirsky, David, Nomura, Yosuke, Yagi, Shigeo, Glaser, Carol, Vollmer, Michael, Press,

Journal:

Genome Medicine

Année:

2016

Langue:

english

Fichier:

PDF, 330 KB

english, 2016

11

Two human immunodeficiency virus Type 2 cases in US blood donors including serologic, molecular, and genomic characterization of an epidemiologically unusual case

Stramer, Susan L., Yu, Guixia, Herron, Ross, Espinoza, Norma, Foster, Gregory A., Naccache, Samia N., Brodsky, Jaye P., Ong, Edgar, Linnen, Jeffrey M., Dyer, Nicole, Styer, Linda M., Parker, Monica M.

Journal:

Transfusion (Elsevier)

Année:

2016

Langue:

english

Fichier:

PDF, 778 KB

english, 2016

12

Coinfections of Zika and Chikungunya Viruses in Bahia, Brazil, Identified by Metagenomic Next-Generation Sequencing

Sardi, Silvia I., Somasekar, Sneha, Naccache, Samia N., Bandeira, Antonio C., Tauro, Laura B., Campos, Gubio S., Chiu, Charles Y., Loeffelholz, M. J.

Journal:

Journal of Clinical Microbiology

Année:

2016

Langue:

english

Fichier:

PDF, 2.54 MB

english, 2016

13

Use of a Molecular Panel to Aid in the Diagnosis of Culture-Negative Meningitis

Dien Bard, Jennifer, Naccache, Samia N, Bender, Jeffrey M

Journal:

Journal of Clinical Microbiology

Année:

2016

Langue:

english

Fichier:

PDF, 371 KB

english, 2016

14

Neurobrucellosis: Unexpected Answer From Metagenomic Next-Generation Sequencing

Mongkolrattanothai, Kanokporn, Naccache, Samia N., Bender, Jeffrey M., Samayoa, Erik, Pham, Elizabeth, Yu, Guixia, Dien Bard, Jennifer, Miller, Steve, Aldrovandi, Grace, Chiu, Charles Y.

Journal:

Journal of the Pediatric Infectious Diseases Society

Année:

2017

Langue:

english

Fichier:

PDF, 273 KB

english, 2017

15

Viral Surveillance in Serum Samples from Patients with Acute Liver Failure by Metagenomic Next-Generation Sequencing

Somasekar, Sneha, Lee, Deanna, Rule, Jody, Naccache, Samia N., Stone, Mars, Busch, Michael P., Sanders, Corron, Lee, William M., Chiu, Charles Y.

Journal:

Clinical Infectious Diseases

Année:

2017

Langue:

english

Fichier:

PDF, 538 KB

english, 2017

16

One year in the life of a rapid syndromic panel for meningitis/encephalitis: a pediatric tertiary care facility's experience

Naccache, Samia N., Lustestica, Maryann, Fahit, Margil, Mestas, Javier, Dien Bard, Jennifer

Journal:

Journal of Clinical Microbiology

Année:

2018

Langue:

english

Fichier:

PDF, 1.02 MB

english, 2018

17

The Genome Sequence of Lone Star Virus, a Highly Divergent Bunyavirus Found in the Amblyomma americanum Tick

Swei, Andrea, Russell, Brandy J., Naccache, Samia N., Kabre, Beniwende, Veeraraghavan, Narayanan, Pilgard, Mark A., Johnson, Barbara J. B., Chiu, Charles Y., Coffey, Lark L.

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 2.27 MB

english, 2013

18

No Viral Association Found in a Set of Differentiated Vulvar Intraepithelial Neoplasia Cases by Human Papillomavirus and Pan-Viral Microarray Testing

Saglam, Ozlen, Samayoa, Erik, Somasekar, Sneha, Naccache, Samia, Iwasaki, Akiko, Chiu, Charles Y, Banks, Lawrence

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 4.14 MB

english, 2015

19

Utility of Metagenomic Next-Generation Sequencing for Characterization of HIV and Human Pegivirus Diversity

Luk, Ka-Cheung, Berg, Michael G., Naccache, Samia N., Kabre, Beniwende, Federman, Scot, Mbanya, Dora, Kaptué, Lazare, Chiu, Charles Y., Brennan, Catherine A., Hackett, John, Carr, Jean K

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 3.35 MB

english, 2015

20

Discovery of a Novel Human Pegivirus in Blood Associated with Hepatitis C Virus Co-Infection

Berg, Michael G., Lee, Deanna, Coller, Kelly, Frankel, Matthew, Aronsohn, Andrew, Cheng, Kevin, Forberg, Kenn, Marcinkus, Marilee, Naccache, Samia N., Dawson, George, Brennan, Catherine, Jensen, Donal

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 2.10 MB

english, 2015

21

Diagnosis of Fatal Human Case of St. Louis Encephalitis Virus Infection by Metagenomic Sequencing, California, 2016

Chiu, Charles Y., Coffey, Lark L., Murkey, Jamie, Symmes, Kelly, Sample, Hannah A., Wilson, Michael R., Naccache, Samia N., Arevalo, Shaun, Somasekar, Sneha, Federman, Scot, Stryke, Doug, Vespa, Paul,

Journal:

Emerging Infectious Diseases

Année:

2017

Langue:

english

Fichier:

PDF, 1.92 MB

english, 2017

22

Genomic Assays for Identification of Chikungunya Virus in Blood Donors, Puerto Rico, 2014

Chiu, Charles Y., Bres, Vanessa, Yu, Guixia, Krysztof, David, Naccache, Samia N., Lee, Deanna, Pfeil, Jacob, Linnen, Jeffrey M., Stramer, Susan L.

Journal:

Emerging Infectious Diseases

Année:

2015

Langue:

english

Fichier:

PDF, 3.13 MB

english, 2015

23

Distinct Zika Virus Lineage in Salvador, Bahia, Brazil

Naccache, Samia N., Thézé, Julien, Sardi, Silvia I., Somasekar, Sneha, Greninger, Alexander L., Bandeira, Antonio C., Campos, Gubio S., Tauro, Laura B., Faria, Nuno R., Pybus, Oliver G., Chiu, Charles

Journal:

Emerging Infectious Diseases

Année:

2016

Langue:

english

Fichier:

PDF, 1.42 MB

english, 2016

24

Clinical Utility of Unbiased Metagenomic Next-Generation Sequencing in Diagnosis of Acute Infectious Diseases: A Prospective Case Series

Naccache, Samia N., Greninger, Alex, Samayoa, Erik, Miller, Steve, Chiu, Charles Y.

Journal:

Open Forum Infectious Diseases

Année:

2015

Langue:

english

Fichier:

PDF, 72 KB

english, 2015

25

The Brief Case: Retropharyngeal Abscess in a 14-Year-Old Caused by Fusobacterium necrophorum

Van, Tam T., Naccache, Samia N., Dien Bard, Jennifer, Burnham, Carey-Ann D.

Journal:

Journal of Clinical Microbiology

Année:

2018

Langue:

english

Fichier:

PDF, 357 KB

english, 2018

26

Closing the Brief Case: Retropharyngeal Abscess in a 14-Year-Old Caused by Fusobacterium necrophorum

Van, Tam T., Naccache, Samia N., Dien Bard, Jennifer, Burnham, Carey-Ann D.

Journal:

Journal of Clinical Microbiology

Année:

2018

Langue:

english

Fichier:

PDF, 112 KB

english, 2018

27

Metagenomics to Assist in the Diagnosis of Bloodstream Infection

Greninger, Alexander L., Naccache, Samia N.

Journal:

The Journal of Applied Laboratory Medicine: An AACC Publication

Année:

2019

Langue:

english

Fichier:

PDF, 154 KB

english, 2019

28

Acute Flaccid Myelitis Cases Presenting During a Spike in Respiratory Enterovirus D68 Circulation: Case Series From a Single Pediatric Referral Center.

Naccache, Samia, Bender, Jeffery, Desai, Jay, Van, Tam, Meyers, Lindsay, Jones, Jay, Mongkolrattanothai, Kanokporn, Bard, Jennifer Dien

Journal:

Open Forum Infectious Diseases

Année:

2017

Fichier:

PDF, 502 KB

2017

29

Application of Laser Light Scattering Technology in Rapid Diagnosis of Urinary Tract Infections and Antimicrobial Susceptibility Testing in a Tertiary Children’s Hospital

Van, Tam, Naccache, Samia, Tomaras, Andrew, Mestas, Javier, Bard, Jennifer Dien

Journal:

Open Forum Infectious Diseases

Année:

2017

Fichier:

PDF, 134 KB

2017

30

Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid

Miller, Steve, Naccache, Samia N., Samayoa, Erik, Messacar, Kevin, Arevalo, Shaun, Federman, Scot, Stryke, Doug, Pham, Elizabeth, Fung, Becky, Bolosky, William J., Ingebrigtsen, Danielle, Lorizio, Wal

Journal:

Genome Research

Année:

2019

Langue:

english

Fichier:

PDF, 3.61 MB

english, 2019

31

Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid

Miller, Steve, Naccache, Samia N., Samayoa, Erik, Messacar, Kevin, Arevalo, Shaun, Federman, Scot, Stryke, Doug, Pham, Elizabeth, Fung, Becky, Bolosky, William J., Ingebrigtsen, Danielle, Lorizio, Wal

Journal:

Genome Research

Année:

2019

Fichier:

PDF, 3.61 MB

2019

32

Back to the basics: Biochemical testing for pathogen identification in the era of Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry (MALDI-TOF MS)

Pandey, Utsav, Naccache, Samia N, Bard, Jennifer Dien

Journal:

Journal of Clinical Microbiology

Année:

2019

Langue:

english

Fichier:

PDF, 656 KB

english, 2019

33

Back to the basics: Biochemical testing for pathogen identification in the era of Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry (MALDI-TOF MS)

Pandey, Utsav, Naccache, Samia N, Bard, Jennifer Dien

Journal:

Journal of Clinical Microbiology

Année:

2019

Fichier:

PDF, 656 KB

2019

34

Evaluation of Oxacillin and Cefoxitin Disk Diffusion and Microbroth Dilution Methods for Detecting mecA -mediated β-lactam Resistance in Contemporary Staphylococcus epidermidis Isolates

Naccache, Samia N., Callan, Katrina, Burnham, Carey-Ann D., Wallace, Meghan A., Westblade, Lars F., Dien Bard, Jennifer

Journal:

Journal of Clinical Microbiology

Année:

2019

Langue:

english

Fichier:

PDF, 712 KB

english, 2019

35

Cerebrospinal Fluid Findings are Poor Predictors of Appropriate FilmArray Meningitis/Encephalitis Panel Utilization in Pediatric Patients.

Precit, Mimi R., Yee, Rebecca, Pandey, Utsav, Fahit, Margil, Pool, Cheryl, Naccache, Samia N., Bard, Jennifer Dien

Journal:

Journal of Clinical Microbiology

Année:

2019

Fichier:

PDF, 682 KB

2019

36

Comparison of Commercially Available and Laboratory Developed Assays for in vitro Detection of SARS-CoV-2 in Clinical Laboratories

Lieberman, Joshua A., Pepper, Gregory, Naccache, Samia N., Huang, Meei-Li, Jerome, Keith R., Greninger, Alexander L.

Journal:

Journal of Clinical Microbiology

Année:

2020

Fichier:

PDF, 861 KB

2020

37

Practical comparison of the BioFireÂ® FilmArrayÂ® Pneumonia Panel to routine diagnostic methods and potential impact on antimicrobial stewardship in adult hospitalized patients with lower respiratory tract infections

Buchan, Blake W., Windham, Sam, Balada-Llasat, Joan-Miquel, Leber, Amy, Harrington, Amanda, Relich, Ryan, Murphy, Caitlin, Dien Bard, Jennifer, Naccache, Samia, Ronen, Shira, Hopp, Amanda, Mahmutoglu,

Journal:

Journal of Clinical Microbiology

Année:

2020

Fichier:

PDF, 1.31 MB

2020

38

Closing the Brief Case: Inherited Chromosomally Integrated Human Herpesvirus 6 (HHV-6) in the Age of Multiplex HHV-6 Testing

Greninger, Alexander L., Naccache, Samia N., Pannaraj, Pia, Jerome, Keith R., Dien Bard, Jennifer, Ruderman, Jeanne W., Burnham, Carey-Ann D.

Journal:

Journal of Clinical Microbiology

Année:

2019

Fichier:

PDF, 148 KB

2019

39

The Brief Case: Inherited Chromosomally Integrated Human Herpesvirus 6 (HHV-6) in the Age of Multiplex HHV-6 Testing

Greninger, Alexander L., Naccache, Samia N., Pannaraj, Pia, Jerome, Keith R., Dien Bard, Jennifer, Ruderman, Jeanne W., Burnham, Carey-Ann D.

Journal:

Journal of Clinical Microbiology

Année:

2019

Fichier:

PDF, 178 KB

2019

40

The Laboratory Diagnosis of COVID-19-- Frequently-Asked Questions

Fang, Ferric C, Naccache, Samia N, Greninger, Alexander L

Journal:

Clinical Infectious Diseases

Année:

2020

Fichier:

PDF, 792 KB

2020